PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020969
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 190aa    MW: 21286 Da    PI: 8.3428
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020969genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-19655255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
               +++GVr++  +g+Wv+eIr+p        +r++lg+f+tae+Aa+a+++a+  ++g
  Cla020969  6 KFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFDTAEDAARAYDQAAILMNG 55
               89****999.**********8.....334**********************98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.5E-33565IPR001471AP2/ERF domain
CDDcd000181.74E-33665No hitNo description
SuperFamilySSF541711.31E-20665IPR016177DNA-binding domain
SMARTSM003807.4E-40669IPR001471AP2/ERF domain
PROSITE profilePS5103221.904663IPR001471AP2/ERF domain
PfamPF008478.8E-12655IPR001471AP2/ERF domain
PRINTSPR003671.3E-10718IPR001471AP2/ERF domain
PRINTSPR003671.3E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MVYSRKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFDTAE DAARAYDQAA ILMNGQNAKT  60
NFPASKDQSE EASHGHGSSS MSPKALSELL STKLRKCCKN PSPSLTCLRL DSDNAHIGVW  120
QKRAGTRATS NWVMRIELGK KEMPSPSLSP ELTSQEADDH GNGIDEEDRI AMQMIEELLN  180
WNCPLPSTSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-16470370ATERF1
2gcc_A1e-16470370ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00527DAPTransfer from AT5G25390Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818241e-142LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132581e-142LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008466408.11e-125PREDICTED: ethylene-responsive transcription factor SHINE 2-like
RefseqXP_008466409.11e-125PREDICTED: ethylene-responsive transcription factor SHINE 2-like
RefseqXP_008466410.11e-125PREDICTED: ethylene-responsive transcription factor SHINE 2-like
SwissprotQ3E9582e-81SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA0A0A0LJA81e-124A0A0A0LJA8_CUCSA; Uncharacterized protein
STRINGGLYMA06G07240.37e-83(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57633144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.28e-71ERF family protein